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  "Title": "Paternity Exclusion in Autopolyploid Species",
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  "Author": "Alexander Zwart",
  "Maintainer": "Alexander Zwart <Alec.Zwart@csiro.au>",
  "Description": "Functions to perform paternity exclusion via allele\nmatching, in autopolyploid species having ploidy 4, 6, or 8.\nThe marker data used can be genotype data (copy numbers known)\nor 'allelic phenotype data' (copy numbers not known).",
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      "title": "Polyploid paternity exclusion by allele matching.",
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