{
  "_id": "6a1f3046b401979e734277bb",
  "Package": "PolyPatEx",
  "Type": "Package",
  "Title": "Paternity Exclusion in Autopolyploid Species",
  "Version": "0.9.2",
  "Date": "2016-04-11",
  "Author": "Alexander Zwart",
  "Maintainer": "Alexander Zwart <Alec.Zwart@csiro.au>",
  "Description": "Functions to perform paternity exclusion via allele\nmatching, in autopolyploid species having ploidy 4, 6, or 8.\nThe marker data used can be genotype data (copy numbers known)\nor 'allelic phenotype data' (copy numbers not known).",
  "License": "GPL-3 + file LICENSE",
  "LazyLoad": "yes",
  "LazyData": "yes",
  "RoxygenNote": "5.0.1.9000",
  "Repository": "https://aleczwart.r-universe.dev",
  "Date/Publication": "2016-04-11 05:47:03 UTC",
  "RemoteUrl": "https://github.com/aleczwart/polypatex",
  "RemoteRef": "HEAD",
  "RemoteSha": "328e0423591423c31bd7b90136c87f673f953e52",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-15 08:51:31 UTC",
    "User": "root"
  },
  "MD5sum": "7839ba79347c2cbe1a64de9fb9109f06",
  "_user": "aleczwart",
  "_type": "src",
  "_file": "PolyPatEx_0.9.2.tar.gz",
  "_fileid": "90206ff78fe1101bf73d075886e3f756ea4e98122c10d91b56c895919119bc33",
  "_filesize": 483980,
  "_sha256": "90206ff78fe1101bf73d075886e3f756ea4e98122c10d91b56c895919119bc33",
  "_created": "2026-05-15T08:51:31.000Z",
  "_published": "2026-06-02T19:34:30.472Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79155727793,
      "time": 105,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7013464207"
    },
    {
      "job": 79155727767,
      "time": 106,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7013466032"
    },
    {
      "job": 79155727719,
      "time": 167,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7013473123"
    },
    {
      "job": 79155727908,
      "time": 130,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7013461753"
    },
    {
      "job": 79155726932,
      "time": 131,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7013433015"
    },
    {
      "job": 79155726980,
      "time": 94,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7367886138"
    },
    {
      "job": 79155727739,
      "time": 83,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7013457730"
    },
    {
      "job": 79155727924,
      "time": 62,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7013451967"
    },
    {
      "job": 79155727880,
      "time": 84,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7013457813"
    }
  ],
  "_buildurl": "https://github.com/r-universe/aleczwart/actions/runs/25909002408",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/aleczwart/polypatex",
  "_commit": {
    "id": "328e0423591423c31bd7b90136c87f673f953e52",
    "author": "Alexander Zwart <zwa005@csiro.au>",
    "committer": "Alexander Zwart <zwa005@csiro.au>",
    "message": "Version 0.9.2, submitted to CRAN\n",
    "time": 1460353623
  },
  "_maintainer": {
    "name": "Alexander Zwart",
    "email": "alec.zwart@csiro.au",
    "login": "aleczwart",
    "uuid": 16695895
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "gtools",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    }
  ],
  "_owner": "aleczwart",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "aleczwart",
      "count": 5,
      "uuid": 16695895
    }
  ],
  "_userbio": {
    "uuid": 16695895,
    "type": "user",
    "name": "Alec Zwart"
  },
  "_downloads": {
    "count": 162,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/PolyPatEx"
  },
  "_devurl": "https://github.com/aleczwart/polypatex",
  "_searchresults": 19,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/PolyPatEx.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/aleczwart/polypatex",
  "_realowner": "aleczwart",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.9",
      "date": "2014-07-02"
    },
    {
      "version": "0.9.1",
      "date": "2015-10-07"
    },
    {
      "version": "0.9.2",
      "date": "2016-04-11"
    }
  ],
  "_exports": [
    "convertToPhenot",
    "fixCSV",
    "foreignAlleles",
    "genotPPE",
    "inputData",
    "multilocusTypes",
    "phenotPPE",
    "potentialFatherCounts",
    "potentialFatherIDs",
    "preprocessData"
  ],
  "_datasets": [
    {
      "name": "FR_Genotype",
      "title": "Example genotype allele dataset",
      "object": "FR_Genotype",
      "class": [
        "data.frame"
      ],
      "fields": [
        "id",
        "popn",
        "mother",
        "gender",
        "SB85a",
        "SB85b",
        "SB85c",
        "SB85d",
        "SB101a",
        "SB101b",
        "SB101c",
        "SB101d",
        "SB243a",
        "SB243b",
        "SB243c",
        "SB243d",
        "CT24a",
        "CT24b",
        "CT24c",
        "CT24d",
        "CT52a",
        "CT52b",
        "CT52c",
        "CT52d",
        "SB207a",
        "SB207b",
        "SB207c",
        "SB207d",
        "SB24a",
        "SB24b",
        "SB24c",
        "SB24d"
      ],
      "rows": 139,
      "table": true,
      "tojson": true
    },
    {
      "name": "GF_Phenotype",
      "title": "Example phenotype allele dataset",
      "object": "GF_Phenotype",
      "class": [
        "data.frame"
      ],
      "fields": [
        "id",
        "popn",
        "mother",
        "locus149a",
        "locus149b",
        "locus149c",
        "locus149d",
        "locus149e",
        "locus149f",
        "locus212a",
        "locus212b",
        "locus212c",
        "locus212d",
        "locus212e",
        "locus212f",
        "locus223a",
        "locus223b",
        "locus223c",
        "locus223d",
        "locus223e",
        "locus223f",
        "locus236a",
        "locus236b",
        "locus236c",
        "locus236d",
        "locus236e",
        "locus236f",
        "locus239a",
        "locus239b",
        "locus239c",
        "locus239d",
        "locus239e",
        "locus239f",
        "locus244a",
        "locus244b",
        "locus244c",
        "locus244d",
        "locus244e",
        "locus244f",
        "locus402a",
        "locus402b",
        "locus402c",
        "locus402d",
        "locus402e",
        "locus402f"
      ],
      "rows": 70,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "PolyPatEx-package",
      "title": "Polyploid paternity exclusion by allele matching.",
      "topics": [
        "PolyPatEx-package"
      ]
    },
    {
      "page": "convertToPhenot",
      "title": "Convert a genotype allele dataset to a phenotype dataset",
      "topics": [
        "convertToPhenot"
      ]
    },
    {
      "page": "fixCSV",
      "title": "Tidy a comma separated value (CSV) file",
      "topics": [
        "fixCSV"
      ]
    },
    {
      "page": "foreignAlleles",
      "title": "Identify foreign alleles",
      "topics": [
        "foreignAlleles"
      ]
    },
    {
      "page": "FR_Genotype",
      "title": "Example genotype allele dataset",
      "topics": [
        "FR_Genotype"
      ]
    },
    {
      "page": "genotPPE",
      "title": "Simple paternity exclusion for genotype allele data",
      "topics": [
        "genotPPE"
      ]
    },
    {
      "page": "GF_Phenotype",
      "title": "Example phenotype allele dataset",
      "topics": [
        "GF_Phenotype"
      ]
    },
    {
      "page": "inputData",
      "title": "Read in, check and preprocess the allele dataset",
      "topics": [
        "inputData"
      ]
    },
    {
      "page": "multilocusTypes",
      "title": "Genotype summaries",
      "topics": [
        "multilocusTypes"
      ]
    },
    {
      "page": "phenotPPE",
      "title": "Simple paternity exclusion for phenotype allele data",
      "topics": [
        "phenotPPE"
      ]
    },
    {
      "page": "potentialFatherCounts",
      "title": "Count potential fathers",
      "topics": [
        "potentialFatherCounts"
      ]
    },
    {
      "page": "potentialFatherIDs",
      "title": "Identify potential fathers",
      "topics": [
        "potentialFatherIDs"
      ]
    },
    {
      "page": "preprocessData",
      "title": "Check and preprocess an allele dataset",
      "topics": [
        "preprocessData"
      ]
    }
  ],
  "_readme": "https://github.com/aleczwart/polypatex/raw/HEAD/README.md",
  "_rundeps": [
    "gtools"
  ],
  "_vignettes": [
    {
      "source": "PolyPatEx-vignette.Rnw",
      "filename": "PolyPatEx-vignette.pdf",
      "title": "Using PolyPatEx",
      "engine": "utils::Sweave",
      "headings": [],
      "created": "2016-01-14 03:22:57",
      "modified": "2016-04-11 05:47:03",
      "commits": 2
    }
  ],
  "_score": 3.9777236052888476,
  "_indexed": true,
  "_nocasepkg": "polypatex",
  "_universes": [
    "aleczwart"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.9.2",
      "date": "2026-05-15T08:53:14.000Z",
      "distro": "noble",
      "commit": "328e0423591423c31bd7b90136c87f673f953e52",
      "fileid": "f51b4ac0157d51ea83ed5c4cecf7980e1894094bc608de5b1dc22dd58dd57a07",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/aleczwart/actions/runs/25909002408"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.9.2",
      "date": "2026-05-15T08:53:22.000Z",
      "distro": "noble",
      "commit": "328e0423591423c31bd7b90136c87f673f953e52",
      "fileid": "d28b6df8aac8e3b0a7b1e329926fb0c247aef2c680a567eab8a79fa1f56ef866",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/aleczwart/actions/runs/25909002408"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.9.2",
      "date": "2026-05-15T08:53:49.000Z",
      "commit": "328e0423591423c31bd7b90136c87f673f953e52",
      "fileid": "1563c6e9d5df86e58a55d5705ef9f9ac575d9473adbbd2f3cfa43ca4d3ca3e0f",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/aleczwart/actions/runs/25909002408"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.9.2",
      "date": "2026-05-15T08:53:12.000Z",
      "commit": "328e0423591423c31bd7b90136c87f673f953e52",
      "fileid": "ef1bd3a599eb3612ed28d7304e45da8d89ee87e8c16c31f40fa0dfb941b3cf8d",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/aleczwart/actions/runs/25909002408"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.9.2",
      "date": "2026-05-15T08:52:45.000Z",
      "commit": "328e0423591423c31bd7b90136c87f673f953e52",
      "fileid": "bffdd6951f370e0145328a573794dd3bd9b9a6965205da2acde7bbe5c421dbc2",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/aleczwart/actions/runs/25909002408"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.9.2",
      "date": "2026-05-15T08:52:30.000Z",
      "commit": "328e0423591423c31bd7b90136c87f673f953e52",
      "fileid": "6fe0d5e6bc01ef382411235a49349e5e74940c8818bfda82097bcdc9c1ecd6ea",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/aleczwart/actions/runs/25909002408"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.9.2",
      "date": "2026-05-15T08:52:47.000Z",
      "commit": "328e0423591423c31bd7b90136c87f673f953e52",
      "fileid": "69a8e880472ec35818be9d02b6bebf511e711662ffb0faccebfcd6fa8a02627f",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/aleczwart/actions/runs/25909002408"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.9.2",
      "date": "2026-06-02T19:34:07.000Z",
      "commit": "328e0423591423c31bd7b90136c87f673f953e52",
      "fileid": "978be378930602522cd815c740a4654c9d5020f5b8ccc6f50b652c404026c2c7",
      "status": "success",
      "buildurl": "https://github.com/r-universe/aleczwart/actions/runs/25909002408"
    }
  ]
}