Package: PolyPatEx 0.9.2

PolyPatEx: Paternity Exclusion in Autopolyploid Species

Functions to perform paternity exclusion via allele matching, in autopolyploid species having ploidy 4, 6, or 8. The marker data used can be genotype data (copy numbers known) or 'allelic phenotype data' (copy numbers not known).

Authors:Alexander Zwart

PolyPatEx_0.9.2.tar.gz
PolyPatEx_0.9.2.zip(r-4.7)PolyPatEx_0.9.2.zip(r-4.6)PolyPatEx_0.9.2.zip(r-4.5)
PolyPatEx_0.9.2.tgz(r-4.6-any)PolyPatEx_0.9.2.tgz(r-4.5-any)
PolyPatEx_0.9.2.tar.gz(r-4.7-any)PolyPatEx_0.9.2.tar.gz(r-4.6-any)
PolyPatEx_0.9.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
PolyPatEx/json (API)

# Install 'PolyPatEx' in R:

install.packages('PolyPatEx', repos = c('https://aleczwart.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/aleczwart/polypatex/issues

Datasets:

FR_Genotype - Example genotype allele dataset
GF_Phenotype - Example phenotype allele dataset

On CRAN:

3.98 score 19 scripts 162 downloads 10 exports 1 dependencies

Last updated from:328e042359. Checks:7 NOTE, 2 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	NOTE	105
source / vignettes	OK	131
linux-release-x86_64	NOTE	106
macos-release-arm64	NOTE	130
macos-oldrel-arm64	NOTE	167
windows-devel	NOTE	83
windows-release	NOTE	84
windows-oldrel	NOTE	62
wasm-release	OK	94

Exports:convertToPhenot fixCSV foreignAlleles genotPPE inputData multilocusTypes phenotPPE potentialFatherCounts potentialFatherIDs preprocessData

Dependencies:gtools

Using PolyPatEx

Rendered fromPolyPatEx-vignette.Rnwusingutils::Sweaveon May 15 2026.

Last update: 2016-04-11
Started: 2016-01-14

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Polyploid paternity exclusion by allele matching.	PolyPatEx-package
Convert a genotype allele dataset to a phenotype dataset	convertToPhenot
Tidy a comma separated value (CSV) file	fixCSV
Identify foreign alleles	foreignAlleles
Example genotype allele dataset	FR_Genotype
Simple paternity exclusion for genotype allele data	genotPPE
Example phenotype allele dataset	GF_Phenotype
Read in, check and preprocess the allele dataset	inputData
Genotype summaries	multilocusTypes
Simple paternity exclusion for phenotype allele data	phenotPPE
Count potential fathers	potentialFatherCounts
Identify potential fathers	potentialFatherIDs
Check and preprocess an allele dataset	preprocessData